Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUSC rs7174412 chr15:45448919 G/A 1.91E-7 482 22.9 20.22 12.77 KM Plot
LUSC rs7182508 chr15:45452095 G/C 6.12E-6 485 22.85 20.22 12.77 KM Plot
LUSC rs7261811 chr20:14622995 C/T 4.67E-6 493 21.73 22.37 2.03 KM Plot
LUSC rs72796597 chr2:22883689 G/A 0 490 21.73 21.77 0.28 KM Plot
LUSC rs72798597 chr2:22909794 C/T 0 490 22.27 21.18 0.28 KM Plot
LUSC rs7517033 chr1:16053809 A/G 3.94E-12 493 0.4 30.55 21.35 KM Plot
LUSC rs75688968 chr10:90005289 G/GTT 1.8E-7 485 22.23 20.28 0.65 KM Plot
LUSC rs76240659 chr2:22916507 T/G 0 486 22.27 21.18 0.28 KM Plot
LUSC rs928546 chr9:11003940 A/C 2.93E-6 493 21.68 23.32 8.7 KM Plot
LUSC rs9791587 chr7:64482220 A/T 3.42E-10 489 21.77 21.77 2.58 KM Plot
LUSC rs9791589 chr7:64482445 A/G 4.19E-10 486 21.73 21.3 2.58 KM Plot
LUSC rs9920394 chr15:32310810 A/G 4.22E-12 493 0.4 30.33 21.33 KM Plot
PAAD rs10010191 chr4:2404120 A/G 0 178 0.4 16.1 15.37 KM Plot
PAAD rs10030427 chr4:17125083 C/T 0 178 15.43 15.78 0.4 KM Plot
PAAD rs10032321 chr4:2401348 G/A 0 177 0.4 16.1 15.4 KM Plot